Hakodate, Hokkaido: Complete Train Travel Guide

Hakodate is one of southern Hokkaido’s most scenic port cities, famous for its fresh seafood, sweeping night views from Mount Hakodate, and historic Motomachi streets. Thanks to the Hokkaido Shinkansen, it’s now easier than ever to reach Hakodate by train.

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Josh K

11/23/20252 min read

An aerial view of a city at night
An aerial view of a city at night

Key Takeaways for Visiting Hakodate

  • Take the Hokkaido Shinkansen to Shin-Hakodate-Hokuto, then transfer to a short local JR train to Hakodate Station.

  • Must-see spots: Mount Hakodate, Goryokaku Park, Morning Market, Motomachi, and the Red Brick Warehouses.

  • Best foods: kaisendon (seafood bowl), squid sashimi, uni, crab.

  • Ideal stay: 1–2 days.

How to Get to Hakodate by Train

Hakodate is served by two major stations:

1. Shin-Hakodate-Hokuto Station

This is the Hokkaido Shinkansen stop. All Shinkansen passengers must transfer here.

2. Hakodate Station

The final stop for travelers visiting downtown Hakodate.

Route From Tokyo
  1. Board the Hokkaido Shinkansen from Tokyo.

  2. Arrive at Shin-Hakodate-Hokuto Station.

  3. Transfer to a local JR train to Hakodate Station (about 20 minutes).

If you hold a Japan Rail Pass, both the Shinkansen and the JR connection are typically included. (Always confirm current coverage when planning your trip.)

Want to learn more about the JR Pass? Visit jrpass.com for detailed information!

Find the best hotel in Hakodate or Hokkaido

Best Things to Do in Hakodate

Mount Hakodate Night View

One of Japan’s top night views. Take the ropeway or bus to the summit for panoramic scenery.

Hakodate Morning Market

Perfect breakfast stop. Try kaisendon, fresh squid, uni, and grilled seafood.

Motomachi District

A charming neighborhood with historic Western-style buildings, churches, slopes, and great photo spots.

Goryokaku Park & Observatory

A beautiful star-shaped fort with a viewing tower. Stunning during cherry blossom and fall foliage seasons.

Kanemori Red Brick Warehouse

A waterfront shopping and dining area, great for strolling and seafood snacks.

Practical Tips for a Smooth Trip

  • Luggage: If you are traveling with big suitcases, consider shipping your luggage between hotels so your train transfers are easier.

  • Seat Reservations: Reserve your Shinkansen seats during busy seasons. The Shin-Hakodate-Hokuto → Hakodate local line usually doesn’t require reservations.

  • Weather: Winter can be snowy and icy, so bring proper footwear and allow extra time for transportation.

Suggested 1-Day Hakodate Itinerary

Morning:

  • Start at Hakodate Morning Market

  • Walk to Kanemori Red Brick Warehouses

  • Coffee break at the harbor

Midday:

  • Explore Motomachi’s historic streets

  • Have lunch near the bay or Motomachi area

Afternoon:

  • Head to Goryokaku Park and climb the observatory

  • Explore nearby shops and cafés

Evening:

  • Take the ropeway up Mount Hakodate for sunset and night views

  • Enjoy dinner (seafood or Hakodate ramen)

Related Itinerary

JR Pass Itineraries: Explore multi-day JR-compatible plans including routes that pass through Hakodate:

Japan Rail Pass Complete Guide

Discover the Japan Rail Pass: Your ultimate guide to the JR Pass, covering how it works, who can buy it, and tips for maximizing your travel experience in Japan.

Travel Tip / JR Pass Advice

How Kids Ride Free with the JR Pass: Useful for families and general JR Pass hacks (luggage, seating, and kids):

Fast FAQ

How long is the train ride from Tokyo to Hakodate?
Around 4 hours via the Hokkaido Shinkansen plus the quick JR transfer.

Is Hakodate covered by the JR Pass?
Yes, the Shinkansen to Shin-Hakodate-Hokuto and the onward JR connection are generally covered. Visit jrpass.com for detailed information

What food should I try in Hakodate?
Kaisendon, squid sashimi, uni, crab, and local seafood dishes.